Indicator and pressure dataExample data from the Baltic Sea 


Food web indicators of the Central Baltic Sea (Bornholm Basin). 

Environmental variables representing pressures for pelagic food webs in the Central Baltic Sea (Bornholm Basin). 

Pressure variables and their associated pressure types from our example data 

TemplatesScoring template which can be modified for scoring() function 

Template of (sub)criteria and corresponding scoring information 

Example output tibblesOutput tibbles from the different modelling function 

Model output tibble from the 

Output tibble from the 

Model output tibble from the 

Model output tibble from the 

Output tibble from the 

Output tibble after applying all IND~pressure modeling functions 

Modelling functionsModelling indicator trends or pressure relationships 

Modeling of indicator trends 

Initialization of indicatorpressure models 

Modeling of indicator responses to single pressures with GAMs 

Modeling of indicator responses to single pressures with GAMMs 

Merging two model output tibbles. 

Calculate the derivatives of the IND response functions and the proportion of pressure range in which the response is significant 

Create tibble of all potential pressure combinations to test for interactions. 

Test for interactions between 2 pressure variables 

Calculates the Normalized Root Mean Square Error (NRMSE) for a list of models 

Scoring functionAssessing the indicator performance based on model results 

Scoring of indicator performance 

Score adjustments for subcriterion 10.1 

Summary of indicator performance scores 

Scorebased distance matrix 

Distance matrix averaged across group scores 

Scorebased cluster analysis 

Status assessmentCalculate Euclidean state space and convex hull 

Euclidean distance in state space 

Convex hull in 2dimensional space 

Plotting functions 

Diagnostic plots for a fitted GAM, GAMM or thresholdGAM(M) 

Create indicator trend plot 

Visualization of all IND~pressuremodel results relevant for the scoring 

Create scorebased spie chart 

Dendrogram of the cluster analysis. 

Time series plot of Euclidean distance 

Convex hull plot 

Internal functions and helpers 

Alternative method for confidence interval approximations of derivatives 

Calculate predicted values and their confidence intervals for GAM(M)s 

Check class and variable names and types of ind and press data 

Check class, existing variables and data types of input objects 

Check class and data type of input vector 

Compare changes in t_var based on different threshold levels. 

Conditional bootstraps 

Calculates the Cook`s distance for Generalized Additive Mixed Models (GAMM) 

Extracts the IND~pressure IDs in the tibble. 

Create a code indicating the significance of values given by p_val. 

Extract specific outputs from the GAM(M) summary 

Returns a logical vector whether input 

LeaveOneOut CrossValidation (LOOCV) procedure for (threshold)GAMs 

Place annotations to a specified position 


Helper functions for plot_model 
Compute (partial) autocorrelation functions and test for significance 

Fits a GAM with a thresholdformulation 